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Publication list is provided below.

JOURNAL PUBLICATIONS

  1. Dinc, I., Dinc, S., Sigdel, M., Sigdel, M., Pusey, M., Aygun, R. S., "Super-thresholding: Supervised Thresholding of Protein Crystal Images," in IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.PP, no.99, pp.1-1. doi: 10.1109/TCBB.2016.2542811. (2014 JIF: 1.438) (PDF)
  2. Dinc I, Pusey M, Aygun Ramazan. "Optimizing Associative Experimental Design for Protein Crystallization Screening," in IEEE Transactions on NanoBioscience, vol.PP, no.99, pp.1-1. doi: 10.1109/TNB.2016.2536030 (2014 JIF: 2.309) (PDF)
  3. Woo, D., Aygun, R. S. "Unsupervised Speaker Identification For TV News," in IEEE MultiMedia, vol.PP, no.99, pp.1-1, doi: 10.1109/MMUL.2016.3 (2014 JIF: 1.694) (PDF)
  4. M. S. Sigdel, M. Sigdel, S. Dinç, I. Dinc, M. L. Pusey and R. S. Aygün, "FocusALL: Focal Stacking of Microscopic Images Using Modified Harris Corner Response Measure," in IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 13, no. 2, pp. 326-340, March-April 1 2016. doi: 10.1109/TCBB.2015.2459685 (2014 JIF: 1.438) (PDF)
  5. Dinc, Semih; Fahimi, Farbod; Aygun, Ramazan: 'Vision-based trajectory tracking for mobile robots using Mirage pose estimation method', IET Computer Vision, 2016, DOI: 10.1049/iet-cvi.2015.0153 (2014 JIF: 0.963) (PDF)
  6. Sigdel, Madhav; Pusey, Marc; Aygun, Ramazan. CrystPro: Spatio-temporal Analysis of Protein Crystallization Images. Crystal Growth & Design, 2015, 15 (11), pp 5254–5262 (2014 JIF: 4.891) (PubMed)
  7. Aygun, R. S., Kandadi, H. SEAL: A Divide-and-Conquer Approach For Sequence Alignment. Network Modeling Analysis in Health Informatics and Bioinformatics. December 2015, 4:25 (PDF)
  8. V. Bettaiah, R. Aygun. “Query-by-Gaming: Interactive Spatio-Temporal Querying and Retrieval Using Gaming Controller,” Journal of Visual Languages and Computing, Vol 29, August 2015, pp. 63-76. doi:10.1016/j.jvlc.2015.03.003 (2014 JIF: 0.893) (PDF)
  9. Yi Chen and Ramazan S. Aygün. 2015. SpriteCam: virtual camera control using sprite. Multimedia Tools and Applications, 74, 3 (February 2015), 1067-1089. DOI=http://dx.doi.org/10.1007 (2014 JIF: 1.346) (PDF)
  10. Begum, S.; Aygun, R.S., " Greedy Hierarchical Binary Classifiers for Multi-class Classification of Biological Data," Network Modeling Analysis in Health Informatics and Bioinformatics, 3:53, Feb 2014. DOI: 10.1007/s13721-014-0053-2 (PDF)
  11. M. Sigdel, M. Pusey, and R. Aygun. “Real-Time Protein Crystallization Image Acquisition and Classification System,” Crystal Growth & Design, 13(7), 2013. DOI: 10.1021/cg3016029 (2014 JIF: 4.891) (PubMed PDF)
  12. Yi Chen, Abhidnya A. Deshpande, and Ramazan S. Aygüun. 2012. Sprite generation using sprite fusion. ACM Trans. Multimedia Comput. Commun. Appl. 8, 2, Article 22 (May 2012), 24 pages. (2014 JIF: 0.971) (PDF)
  13. M. Naik, M. Sigdel, and R. Aygun. “Spatio-Temporal Querying Recurrent Multimedia Databases Using a Semantic Sequence State Graph Multimedia Systems,” Multimedia Systems Journal, Vol. 18, Issue 3, pp. 263-281, June 2012 (2014 JIF: 0.619) (PDF)
  14. Jacob Hauenstein, Ramazan Tinaztepe, Ramazan Aygun: 'You Can Run, but You Cannot Hide': Tracking Objects that leave the Field-of-View. International Journal of Information Technology and Decision Making 11(1): 11-31 (2012) (2014 JIF: 1.406) (PDF)
  15. K. Darabkeh and Ramazan S. Aygun. “Improving UDP performance using intermediate QoD-aware hop system for wired/wireless multimedia communications systems,” International Journal of Network Management, DOI: 10.1002/nem.768, Vol. 21, No. 5, pp. 432-454, 2011 (2014 JIF: 0.283) (PDF)
  16. Ramazan S. Aygün, Yi Ma, Kemal Akkaya, Glenn Cox and Ali Bicak. “A conceptual model for data management and distribution in peer-to-peer systems,” Peer-to-Peer Networking and Applications Vol. 3, No. 4, pp. 294-322, 2010 (2014 JIF: 0.632) (PDF)
  17. Y Chen and Ramazan S. Aygun. “Synthetic Video Generation for Evaluation of Sprite Generation,”2010 International Journal of Multimedia Data Engineering and Management (IJMDEM), Vol. 1, No. 2, pp. 34-61, 2010 
  18. Vani Jain and Ramazan S. Aygun. “Spatio-Temporal Querying of Video Content Using SQL for Quantizable Video Databases,” Journal of Multimedia, Vol. 4, No. 4, pp. 215-227, August 2009 (PDF)
  19. Tarun Yadav and Ramazan S. Aygun. “I-Quest : an Intelligent QUEry STructuring based on user browsing feedback for semantic retrieval”, Multimedia Tools Appl. 43, 2 (Jun. 2009), 145-178. (2014 JIF: 1.346) (PDF)
  20. Ramazan S. Aygun. “S2S: structural-to-syntactic matching similar documents,” Knowledge and Information Systems, Vol. 16, Number 3, pp. 303-329, September 2008 (2014 JIF: 1.782) (PDF)
  21. Donna M. Carter, Ramazan Aygun, Glenn Cox, Mary Ellen Weisskopf, and Letha Etzkorn. “The Effect of Uncontrolled Concurrency on Model Checking” Concurrency and Computation: Practice and Experience, Vol. 20, Issue 12, pp. 1419-1438, August 2008 (2014 JIF: 0.997) (PDF)
  22. Preti Jain, Puneet Wadhwa, Ramazan Aygun, and Gopi Podila. “Vector–G: Multi-Modular SVM-Based Heterotrimeric G-Protein Prediction” In Silico Biol. 8, 0013 (2008) (PDF)
  23. Kemal Akkaya, Murat Demirbas, and R. Savas Aygun. “The Impact of Data Aggregation on the Performance of Wireless Sensor Networks”, Wireless Communications and Mobile Computing, Volume 8, Issue 2, February 2008, pp. 171-193, DOI: 10.1002/wcm.454 (2014 JIF: 0.858) (PDF)
  24. Khalid Darabkh and Ramazan Aygün, “TCP Traffic Control Evaluation and Reduction over Wireless Networks Using Parallel Sequential Decoding Mechanism,” EURASIP Journal on Wireless Communications and Networking, vol. 2007, Article ID 52492, 16 pages, 2007. doi:10.1155/2007/52492 (2014 JIF: 0.724) (PDF)
  25. Ramazan Savas Aygun and Aditya Patil. "PressBase: A presentation synchronization database for distributed multimedia systems" IEEE Transactions on Multimedia, Vol. 8(2), April 2006, 289-296 (2014 JIF: 2.303) (PDF)
  26. Ramazan Savas Aygun and Aidong Zhang. “SynchRuler: Rule-based Flexible Synchronization Modeling with Model Checking” IEEE Transactions on Knowledge and Data Engineering, Vol. 17(12), December 2005, pp. 1706-1720. (2014 JIF: 2.067) (PDF)
  27. Ramazan Savas Aygun and Adnan Yazici. "Modeling and Management of Fuzzy Information in Multimedia Database Applications", Multimedia Tools and Applications: An International Journal, Vol. 24(1), September 2004, pp. 29-56 (2014 JIF: 1.346) (PDF)
  28. Markus Mielke, Ramazan Savas Aygun, Yuqing Song, and Aidong Zhang. "PLUS: Probe-Loss Utilization Streaming Mechanism for Distributed Multimedia Presentation Systems", IEEE Transactions on Multimedia, December 2002, pp. 561-577 (2014 JIF: 2.303) (PDF)

CONFERENCE PUBLICATIONS


  1. S. Aygun, A. Yazici, and N. Arica, ``Conceptual Data Modeling of Multimedia Database Applications'', The proceedings of the 4th International Workshop on Multi-Media Database Management Systems, pp. 182-189, Dayton, Ohio, August 1998
  2. Markus Mielke, Yuqing Song, Ramazan Aygun, Aidong Zhang, "NetMedia: Giving Control to Distributed Multimedia Presentation Systems" (Demonstration). 11th International Conference on Scientific and Statistical Database Management, Proceedings, Cleveland, Ohio, USA, 28-30 July, 1999, pp. 276
  3. Ramazan S. Aygun and Aidong Zhang. "Interactive multimedia presentation management in distributed multimedia systems", Proc. of Int. Conf. on Information Technology: Coding and Computing, Las Vegas, April, 2001, pp. 275-279
  4. Ramazan S. Aygun and Aidong Zhang. "Stationary background generation from MPEG compressed video sequences", 2001 IEEE International Conference on Multimedia and Expo, Tokyo, August, 2001, pp. 908-911
  5. Ramazan S. Aygun. "An integrated framework for interactive multimedia presentations in distributed multimedia systems" (Doctoral Symposium), 2001 ACM Multimedia Conference, Ottawa, Canada, 2001, pp. 457-458
  6. Ramazan S. Aygun and Aidong Zhang. "Middle-Tier for Multimedia Synchronization" (Short Paper), 2001 ACM Multimedia Conference, Ottawa, Canada, 2001, pp. 471-474
  7. Ramazan Savas Aygun and Aidong Zhang. "Modeling and Verification of Interactive Flexible Multimedia Presentations Using PROMELA/SPIN", 9th International SPIN Workshop on Model Checking of Software, Grenoble, France, April 2002, pp. 205-212
  8. Ramazan Savas Aygun and Aidong Zhang. " Management of Backward-Skip Interactions Using Synchronization Rules ", The 6th World Conference on Integrated Design & Process Technology, Pasadena, California, June 2002
  9. Ramazan Savas Aygun and Aidong Zhang. "Extracting Coarse Boundary Features for Video Processing", 2002 IEEE International Conference on Multimedia and Expo, Lausanne, Switzerland, August, 2002, Volume 2, pp. 65-68
  10. Ramazan Savas Aygun and Aidong Zhang. "Reducing Blurring-Effect in High Resolution Mosaic Generation", 2002 IEEE International Conference on Multimedia and Expo, Lausanne, Switzerland, August, 2002, Volume 2, pp. 537-540
  11. Ramazan Savas Aygun and Aidong Zhang. "Global Motion Estimation from Semi-Dynamic Video using Motion Sensors", 2002 IEEE International Conference on Image Processing, Rochester, New York, September, 2002, Volume 2, pp. 273-276
  12. Ramazan Savas Aygun and Aidong Zhang. “Sprite Pyramid for Videos and Images Having Finite-Depth Scenes”, 2004 IEEE Conference on Multimedia and Expo, Taipei, Taiwan, June, 2004.
  13. Ramazan Savas Aygun and Aidong Zhang.. “Integrating Virtual Camera Controls into Digital Video”, 2004 IEEE Conference on Multimedia and Expo, Taipei, Taiwan, June, 2004
  14. Yi Ma and Ramazan Savas Aygun. Peer-to-Peer Multimedia Digital Library, 2005 IEEE 37th Southeastern Symposium on System Theory. March, 2005, pp. 130-134.
  15. Yi Ma and Ramazan Savas Aygun. "The Methodology of Mesh-Cast Streaming in P2P Networks," 2005 IEEE Int. Workshop on Multimedia Information Processing and Retrieval (MIPR) in the Proceedings 7th IEEE International Symposium on Multimedia, December, 2005, pp. 611-615.
  16. Khalid Darabkh and Ramazan Savas Aygun. “Performance Evaluation of Sequential Decoding System for UDP-Based Systems for Wireless Multimedia Networks” 2006 International Conference on Wireless Networks, Las Vegas, June 26-29, 2006.
  17. Khalid Darabkh and Ramazan Savas Aygun. “Quality of Service Evaluation of Convolutional Decoding Using Fano Algorithms for TCP/IP-Based Systems in Packet Switching ATM Networks” 2006 International Conference on Internet Computing, Las Vegas, June 26-29, 2006.
  18. Khalid Darabkh and Ramazan Savas Aygun. “Quality of Service Performance Evaluation of Selective Message Discarding Policies for Multimedia Networking,” 2006 International Conference on Internet Computing, Las Vegas, June 26-29, 2006.
  19. K. A. Darabkh and R. S. Aygun, "Simulation of Quality of Service of Congestion Control in Multimedia Networking Using Frame Discarding Policies" Proceedings of 2006 SCS International Conference on Modeling and Simulation - Methodology, Tools, Software Applications (M&S-MTSA'06), Calgary, Canada, , July 31- August 2, 2006
  20. K. A. Darabkh and R. S. Aygun, "Simulation of Performance Evaluation of Error Control for Packet-to-Packet Acknowledgment Based Systems in ATM Networks" Proceedings of 2006 SCS International Conference on Modeling and Simulation - Methodology, Tools, Software Applications (M&S-MTSA'06), Calgary, Canada, July 31- August 2, 2006
  21. Preti Jain, Wadhwa P, Freije N, Aygun R, Podila G. A Robust Method for Identification and Comparative Genomics of G Proteins in Eukaryotes, PBR 2006 (Poster, non-refereed)
  22. Preti Jain, Brar S, Freije N, Wadhwa P, Aygun R, Podila G. Prediction of G-Proteins using Support Vector Machines: A Machine Learning Algorithm, PBR 2006 (Poster, non-refereed)
  23. Donna Carter and R. S. Aygun, “The Evaluation of State Explosion on Producer/Consumer Problem Using Promela/SPIN Model Checker” 10th World Conference on Integrated Design & Process Technology, Antalya, Turkey, 2007
  24. Ramazan Aygun, “Object Tracking and Solving Image Puzzles using CmuCam2+ Vision Sensor,” University of Alabama in Huntsville Young Faculty Research Proceedings, 2007.
  25. Vani Jain and Ramazan Aygun, “SMART: A Grammar-Based Semantic Video Modeling and Representation,” Proceedings of IEEE SouthEastCon, Huntsville, AL, 2008
  26. Preti Jain, Ramazan Aygun, and Gopi Podila. Comparative genomic analysis of transcription factors in symbiotic fungus Laccaria bicolor and other pathogenic and nonpathogenic Basidiomycetes and Ascomycetes, Poster Proceedings of 4th Int. Symposium on Bioinformatics Research and Applications, 2008
  27. Mitesh Naik, Vani Jain, and Ramazan Aygun. “S3G: A Semantic Sequence State Graph for Indexing Spatio-Temporal Data - a Tennis Video Database Application,” 2008 IEEE Int. Conference on Semantic Computing, pp. 66-73, Santa Clara, CA, August, 2008
  28. Yi Chen; Aygun, R.S.; , "Synthetic Video Generation with Camera Motion Patterns to Evaluate Sprite Generation," Advances in Multimedia, 2009. MMEDIA '09. First International Conference on , vol., no., pp.140-145, 20-25 July 2009
  29. Deshpande, A.A.; Aygun, R.S.; , "Motion Based Video Classification for SPRITE Generation," Database and Expert Systems Application, 2009. DEXA '09. 20th International Workshop on , vol., no., pp.231-235, Aug. 31 2009-Sept. 4 2009
  30. Yi Chen; Aygun, R.S.; , "Synthetic Video Generation with Complex Camera Motion Patterns to Evaluate Sprite Generation," Multimedia, 2009. ISM '09. 11th IEEE International Symposium on , vol., no., pp.657-662, 14-16 Dec. 2009
  31. Yi Chen; Deshpande, A.A.; Aygun, R.S.; , "SpriteDB Tool A Web-Tool for Comparing Sprite Generation Results," Multimedia, 2009. ISM '09. 11th IEEE International Symposium on , vol., no., pp.438-439, 14-16 Dec. 2009
  32. Ramazan Aygun, Yi Chen, Vineetha Bettaiah, Thejaswi Raya, and Ayesha Bhatnagar, “Mosaic Generation: Challenges & Future Directions,” NSF III 2010 Workshop, April 22-23, 2010 (abstract-poster only)
  33. Vineetha Bettaiah and Ramazan Aygun, “A User Interface for Spatio-Temporal ‘Eventually’ Queries using Gamepad,” Advances in Multimedia, 2011. MMEDIA '11. Third International Conference on , MMEDIA 2012, pp. 38-43, Budapest, Hungary, 17 April 2011
  34. Yi Chen, Ramazan Savas Aygün: Improving Global Motion Estimation Using Texture Masks. ISM 2011: 583-588
  35. M. Sigdel, S. Begum, M. Pusey, and R. Aygun. “Real-Time Protein Image Acquisition and Classification System,” 14th International Conf. on the Crystallization of Biological Macromolecules, Huntsville, AL, September 23-28, 2012 (abstract, oral presentation)
  36. Begum, S.; Aygun, R.S., "Analyzing the Performance of Hierarchical Binary Classifiers for Multi-class Classification Problem Using Biological Data," Machine Learning and Applications (ICMLA), 2012 11th International Conference on , vol.2, no., pp.145,150, 12-15 Dec. 2012
  37. S. Dinc and R. Aygun. “Evaluation of Hyperspectral Image Classification Using Random Forest and Fukunaga-Koontz Transform.” MLDM 2013: 234-245
  38. M. Sigdel and R. Aygun. “Pacc - A Discriminative and Accuracy Correlated Measure for Assessment of Classification Results. MLDM 2013: 281-295
  39. S. Dinc, F. Fahimi, and R. Aygun “Vision-based trajectory tracking approach for mobile platforms in 3D world using 2D image space,” Proceedings of the ASME 2013 International Mechanical Engineering Congress and Exposition, IMECE2013-64969, November 15-21, 2013
  40. R. Caywood, J. Edwards, and R. Aygun. “Object Mosaicking: Reconstruction of Moving Objects Captured Through a Limited View,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  41. I. Dinc, M. Sigdel, S. Dinc, MS Sigdel, M. Pusey, R. Aygun. “Evaluation of Normalization and PCA on the Performance of Classifiers for Protein Crystallization Images,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  42. MS Sigdel, M. Sigdel, S. Dinc, I. Dinc, M. Pusey, R. Aygun. “Autofocusing for Microscopic Images using Harris Corner Response Measure,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  43. S. Dinc, M. Sigdel, I. Dinc, MS. Sigdel, F. Fahimi, R. Aygun. “Depth-Color Image Registration for 3D Surface Texture Construction using Kinect Camera System,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  44. M. Sigdel, I. Dinc, S. Dinc, MS Sigdel, M. Pusey, R. Aygun. “Evaluation of Semi-supervised Learning for Classification of Protein Crystallization Imagery,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  45. Madhav Sigdel, Madhu S. Sigdel, Imren Dinc, Semih Dinc, Marc L. Pusey, Ramazan S. Aygun, "Classification of Protein Crystallization Trial Images Using Geometric Features", IPCV 2014, July 2014.
  46. Imren Dinc, Semih Dinc, Madhav Sigdel, Madhu S. Sigdel, Marc L. Pusey, Ramazan S. Aygun,"DT-Binarize: A Hybrid Binarization Method Using Decision Tree for Protein Crystallization Images", IPCV 2014, July 2014.
  47. Akkaya, K., Guvenc, I., Aygun, R. S., Pala, N., Kadri, A. (in press). IoT-based Occupancy Monitoring Techniques for Energy-Efficient Smart Buildings. IEEE WCNC 2015 - Workshop - E2IoT.
  48. Imren Dinc, Marc L. Pusey, Ramazan S. Aygun, "Protein Crystallization Screening using Associative Experimental Design", ISBRA 2015, Bioinformatics Research and Applications, pp. 84-95.
  49. Dinc, S., Fahimi, F., Aygun, R.S., “GPU Based Robust Image Registration for Composite Translational, Rotational and Scale Transformations,” 2015 IEEE International Symposium on Multimedia (short paper, accepted)


BOOK CHAPTERS


1. Aidong Zhang, Ramazan Savas Aygun, and Yuqing Song. "Streaming Multimedia Presentations in Distributed Multimedia Database Environments", in Handbook of Video Databases: Design and Applications, CRC Press, 2003, pp. 807-829

2. Aidong Zhang, Ramazan Savas Aygun, and Yuqing Song. "Feature-based retrieval in visual database systems", in Multimedia Information Retrieval and Management: Technological Fundamentals and Applications, Springer-Verlag, 2003

3. Aidong Zhang, Lei Zhu, Ramazan Aygun, Gholam Sheikholeslami, Yuqing Song. “Image Databases” in Handbook of Database Technologies, Chapman & Hall/CRC Press, to appear in 2009

4. Imren Dinc, Semih Dinc, Madhav Sigdel, Madhu S. Sigdel, Marc L. Pusey, Ramazan S. Aygun,"DT-Binarize: A Decision Tree Based Binarization for Proteins", Emerging Trends in Image Processing, Computer Vision, and Pattern Recognition, 2015.

5. Madhav Sigdel, Madhu S. Sigdel, Imren Dinc, Semih Dinc, Marc L. Pusey, Ramazan S. Aygun, "Automatic Classification of Protein Crystal Images", Emerging Trends in Image Processing, Computer Vision, and Pattern Recognition, 2015.