RAMAZAN S. AYGUN
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DATA ANALYTICS FOR PROTEIN CRYSTALLIZATION

PROJECTS

  1. Crystal X2 and Scoring of Protein Crystallization Trial Images
  2. Associative Experimental Design for Protein Crystallization Screening
  3. Spatio-Temporal Analysis of Protein Crystal Growth
  4. FocusALL: Focusing of Protein Crystallization Trial Images
  5. Segmentation of Protein Crystal Regions
  6. Visual X2: Visualization of Plates for Protein Crystallization Analysis

Citations

  1. 1 Dinc, I., Dinc, S., Sigdel, M., Sigdel, M., Pusey, M., Aygun, R. S. Super-thresholding: Supervised Thresholding of Protein Crystal Images. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
  2. Dinc I, Pusey M, Aygun Ramazan. Optimizing Associative Experimental Design for Protein Crystallization Screening. IEEE Transactions on NanoBioscience, 2016
  3. Sigdel, M.S.; Sigdel, M.; Dinc, S.; Dinc, I.; Pusey, M.; Aygun, R., "FocusALL: Focal Stacking of Microscopic Images Using Modified Harris Corner Response Measure," in Computational Biology and Bioinformatics, IEEE/ACM Transactions on , vol.PP, no., pp. doi: 10.1109/TCBB.2015.2459685 (available online)
  4. Sigdel, Madhav; Pusey, Marc; Aygun, Ramazan. CrystPro: Spatio-temporal Analysis of Protein Crystallization Images. Crystal Growth & Design, 2015, 15 (11), pp 5254–5262
  5. Imren Dinc, Marc L. Pusey, Ramazan S. Aygun, "Protein Crystallization Screening using Associative Experimental Design", ISBRA 2015, Bioinformatics Research and Applications, pp. 84-95.
  6. Imren Dinc, Semih Dinc, Madhav Sigdel, Madhu S. Sigdel, Marc L. Pusey, Ramazan S. Aygun,"DT-Binarize: A Decision Tree Based Binarization for Proteins", Emerging Trends in Image Processing, Computer Vision, and Pattern Recognition, 2015.
  7. Madhav Sigdel, Madhu S. Sigdel, Imren Dinc, Semih Dinc, Marc L. Pusey, Ramazan S. Aygun, "Automatic Classification of Protein Crystal Images", Emerging Trends in Image Processing, Computer Vision, and Pattern Recognition, 2015.
  8. I. Dinc, M. Sigdel, S. Dinc, MS Sigdel, M. Pusey, R. Aygun. “Evaluation of Normalization and PCA on the Performance of Classifiers for Protein Crystallization Images,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  9. 42 MS Sigdel, M. Sigdel, S. Dinc, I. Dinc, M. Pusey, R. Aygun. “Autofocusing for Microscopic Images using Harris Corner Response Measure,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  10. 44 M. Sigdel, I. Dinc, S. Dinc, MS Sigdel, M. Pusey, R. Aygun. “Evaluation of Semi-supervised Learning for Classification of Protein Crystallization Imagery,” IEEE SoutheastCon 2014, Lexington, KY, March 13-16, 2014
  11. Madhav Sigdel, Madhu S. Sigdel, Imren Dinc, Semih Dinc, Marc L. Pusey, Ramazan S. Aygun, "Classification of Protein Crystallization Trial Images Using Geometric Features", IPCV 2014, July 2014.
  12. Imren Dinc, Semih Dinc, Madhav Sigdel, Madhu S. Sigdel, Marc L. Pusey, Ramazan S. Aygun,"DT-Binarize: A Hybrid Binarization Method Using Decision Tree for Protein Crystallization Images", IPCV 2014, July 2014.
  13. M. Sigdel and R. Aygun. “Pacc - A Discriminative and Accuracy Correlated Measure for Assessment of Classification Results. MLDM 2013: 281-295
  14. M. Sigdel, S. Begum, M. Pusey, and R. Aygun. “Real-Time Protein Image Acquisition and Classification System,” 14th International Conf. on the Crystallization of Biological Macromolecules, Huntsville, AL, September 23-28, 2012 (abstract, oral presentation)