Programming Assignment 3

Date Posted: November 5
Final Project Due: Tuesday, December 3
Final Project DDD: Tuesday, December 10, 3:00 P.M.

Programming Assignment 3

1. The GUI shall provide a text field where the user can enter the name of the data file to be used. There will also be two buttons. One button will cause the name of the data file to be read from the text field and passed to the data parser to initialize the simulation data. The other button will exit the application.
2. There must be appropriate display widgets included in the GUI to display the following information:
   1. The genus, species and common name of the test organism.
   2. The number of chromosomes included in the simulation.
   3. A description of each gene including its name, dominant and recessive trait, letter used to represent each, and the chromosome on which it resides
   4. The genotype of each of the parent organisms.
   5. The result of running the experiment
   6. A text field where the user can enter the number of offspring to generate.
   7. A button to run the experiment.
   8. A text field where the user can enter the name of a text file into which to save the results of a run and a button to initiate saving to the selected text file.
3. The user may run as many different experiments as desired, i.e. each time the "run experiment" button is pressed a genetic cross shall be calculated using the currently available data.

1. Create this as a MFC application program.
2. In the MFC Application Wizard use the following settings:
   1. Application type:
            Dialog based
            Uncheck "Use Unicode libraries"
            Check "MFC standard"
            Check "Use MFC in a shared DLL"
      
   2. User Interface Features:
            Accept all default settings
      
   3. Advanced Features:
            Uncheck "ActiveX controls"
            Accept all other defaults
      
   4. Generated Classes:
            Accept all defaults unless you want to change the name of the main classes.
      
3. Copy all of the class files from programming assignment 2 into the program 3 folder, except for the file containing main().
4. Add all the classes to the project
   
   1. Right click the "Header Files" folder in the Prog 3 project (in the Solution Explorer pane of Visual Studio)
   2. Select "Add" and from the sub-menu select "Existing Item".
   3. In the dialog box that appears select all of the .h files you just copied into the project. Make sure you do not select any .h files that are already part of the project.
   4. Repeat for the "Source Files" directory selecting all of the .cpp files you copied from program 2.
5. Compile the project. Expect to get a multitude of errors. Most, if not all of these will be "unexpected end of file while looking for precompiled headers". To fix this do the following:
   1. Double click a line in the list of errors in the Output pane to display the file where that error is found.
   2. At the top of that source file add the line: #include "stdafx.h". Put this before any other include.
6. Recompile the project. This should give you a successful compile, but you will see a lot of warnings everywhere you used any of the standard Kernigan and Ritchie string functions (strcpy, strcmp, strlen, etc.). Ignore these warnings.

1. Open the IDD_programName_DIALOG dialog resource in the resource editor.
2. Delete the Cancel button.
3. Delete the static text that appears in the middle of the dialog box.
4. Resize the dialog to make it large enough to draw the Genetics Sim. This doesn't have to be exact as you can programmatically resize the window before it is displayed. See the "Resizing" hint below.
5. Move the OK button to its new location and change the caption to "End Simulation".
6. Add other widgets as needed so that all required data is displayed.

		char datafile[64];
		m_DataFileName.GetWindowText(datafile, 63);

		m_DataFileName.SetWindowText(datafile);

	void CProg3Dlg::OnBnClickedRunSim()
	{
		char line[32];
		m_NumOffspringTF.GetWindowText(line, 31);
		int numOffspring = atoi(line);
		if(numOffspring <= 0)
		{
			MessageBoxA("You must enter the number of offspring (1-1000).", 
				"Invalid Offspring Count", MB_OK | MB_ICONWARNING);
			return;
		}
		m_TheSim = MendelianSim::getInstance();
		m_TheSim->generateOffspring(numOffspring);
		// Display the results in the list box
		m_TheSim->printResults(&m_ExpResultsListBox);
	}

YOU WILL NOT BE ABLE TO JUST COPY AND PASTE THIS CODE INTO YOUR PROGRAM AND HAVE IT WORK CORRECTLY. YOU MUST STUDY THE CODE TO SEE WHAT IT IS DOING AND THEN ADAPT IT TO WORK IN YOUR PROGRAM.

	//-------------------------------------------------------------
	// Handle clicks on the Initialize Simulation button
	//-------------------------------------------------------------
	void CProg3Dlg::OnBnClickedButton1()
	{
		char fileName[64]; // Data file name
		char line[64];
		int count;
		Organism *org;
		MasterGene *mGene;
		count = 1;
		vector *gVec;
		char allele1, allele2;
	
		// Get name of the data file
		m_DataFileTF.GetWindowText(fileName, 63);
		// Instantiate the data parser
		m_DataParser = GeneticsSimDataParser::getInstance();
		// Give the data parser the name of the data file and initialize the data
		if(!m_DataParser->initDataFile(fileName))
		{
			MessageBoxA("Failed to open data file.  Application terminating.", 
				"Data File Failure", MB_OK | MB_ICONERROR);
			exit(0);
		}
		// Create the simulation and create the organisms
		m_TheSim = MendelianSim::getInstance();
		m_TheSim->initSim();
	
		//----------------------------------------
		// Get the data and write it to the GUI
		//----------------------------------------
		// Set genius-species name
		m_GenSpecNameTF.SetWindowText(m_DataParser->getScientificName());
		// Set common name
		m_CommonNameTF.SetWindowTextA(m_DataParser->getCommonName());
		// Set chromosome count
		sprintf(line, "%d", m_DataParser->getChromosomeCount());
		m_NumChromosomesTF.SetWindowTextA(line);
		// List gene/chromosome data 
		m_GeneDataListBox.ResetContent();
		org = m_TheSim->getParent1(); // Get a parent
		vector *chVec = org->getChromosomes(); // Get the vector of chromosomes
		for(vector::iterator cItr = chVec->begin(); cItr != chVec->end(); cItr++)
		{
			// Add a chrosoome number
			sprintf(line, "Chromosome %d", count);
			count++;
			m_GeneDataListBox.AddString(line);
			gVec = (*cItr)->getGeneVector();
			// List all the genes in this chromosome
			for(vector::iterator gItr = gVec->begin(); gItr != gVec->end(); gItr++)
			{
				mGene = (*gItr)->getMasterGene();
				sprintf(line, "    Trait Name: %s", mGene->getTraitName());
				m_GeneDataListBox.AddString(line);
				sprintf(line, "        Dominant Name: %s (%c)", mGene->getDominantName(),
					mGene->getDominantChar());
				m_GeneDataListBox.AddString(line);
				sprintf(line, "        Recessive Name: %s (%c)", mGene->getRecessiveName(),
					mGene->getRecessiveChar());
				m_GeneDataListBox.AddString(line);
				sprintf(line, "        Chance of crossover: %.2f", mGene->getCrossOverChance());
				m_GeneDataListBox.AddString(line);
			}
		} // End for all chromosomes
		// List parent 1 data (already have org pointing to it)
		m_Parent1ListBox.ResetContent();
		org = m_TheSim->getParent1(); 
		chVec = org->getChromosomes(); // Get the vector of chromosomes
		for(vector::iterator cItr = chVec->begin(); cItr != chVec->end(); cItr++)
		{
			gVec = (*cItr)->getGeneVector();
			// List all the genes in this chromosome
			for(vector::iterator gItr = gVec->begin(); gItr != gVec->end(); gItr++)
			{
				allele1 = (*gItr)->getStrand1Allele();
				allele2 = (*gItr)->getStrand2Allele();
				mGene = (*gItr)->getMasterGene();
				if(allele1 == allele2) // Its homozygous
				{
					if(isupper(allele1)) // Its dominant
					{
						sprintf(line, "%c%c - Homozygous Dominant - %s = %s",
							allele1, allele2, mGene->getTraitName(), mGene->getDominantName());
						m_Parent1ListBox.AddString(line);
					}
					else // Its recessive
					{
						sprintf(line, "%c%c - Homozygous Recessive - %s = %s",
							allele1, allele2, mGene->getTraitName(), mGene->getRecessiveName());
						m_Parent1ListBox.AddString(line);
					}
				}
				else // Its heterozygous
				{
					if(isupper(allele1)) // Allele1 is the upper case letter
					{
						sprintf(line, "%c%c - Heterozygous Dominant - %s = %s",
							allele1, allele2, mGene->getTraitName(), mGene->getDominantName());
						m_Parent1ListBox.AddString(line);
					}
					else // Allele2 is the upper case letter
					{
						sprintf(line, "%c%c - Heterozygous Dominant - %s = %s",
							allele2, allele1, mGene->getTraitName(), mGene->getDominantName());
						m_Parent1ListBox.AddString(line);
					}
				}
			}
		}
		// List parent 2 data (already have org pointing to it)
		m_Parent2ListBox.ResetContent();
		org = m_TheSim->getParent2(); 
		chVec = org->getChromosomes(); // Get the vector of chromosomes
		for(vector::iterator cItr = chVec->begin(); cItr != chVec->end(); cItr++)
		{
			gVec = (*cItr)->getGeneVector();
			// List all the genes in this chromosome
			for(vector::iterator gItr = gVec->begin(); gItr != gVec->end(); gItr++)
			{
				allele1 = (*gItr)->getStrand1Allele();
				allele2 = (*gItr)->getStrand2Allele();
				mGene = (*gItr)->getMasterGene();
				if(allele1 == allele2) // Its homozygous
				{
					if(isupper(allele1)) // Its dominant
					{
						sprintf(line, "%c%c - Homozygous Dominant - %s = %s",
							allele1, allele2, mGene->getTraitName(), mGene->getDominantName());
						m_Parent2ListBox.AddString(line);
					}
					else // Its recessive
					{
						sprintf(line, "%c%c - Homozygous Recessive - %s = %s",
							allele1, allele2, mGene->getTraitName(), mGene->getRecessiveName());
						m_Parent2ListBox.AddString(line);
					}
				}
				else // Its heterozygous
				{
					if(isupper(allele1)) // Allele1 is the upper case letter
					{
						sprintf(line, "%c%c - Heterozygous Dominant - %s = %s",
							allele1, allele2, mGene->getTraitName(), mGene->getDominantName());
						m_Parent2ListBox.AddString(line);
					}
					else // Allele2 is the upper case letter
					{
						sprintf(line, "%c%c - Heterozygous Dominant - %s = %s",
							allele2, allele1, mGene->getTraitName(), mGene->getDominantName());
						m_Parent2ListBox.AddString(line);
					}
				}
			}
		}
	}